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Data Set Group: INIA LCM (11 Regions) RNA-seq Transcript Level (Dec15) modify this page

Data Set: INIA LCM (11 Regions) BASELINE RNA-seq Transcript Level (Dec15) modify this page
GN Accession: GN775
GEO Series: No Geo series yet
Title:
Organism: Mouse (mm10)
Group: BXD
Tissue: LCM Brain Regions mRNA
Dataset Status: Private
Platforms: ABI 550XL Wildfire
Normalization: RNA-seq
Contact Information
Megan Mulligan
University of Tennessee Health Science Center
855 Monroe Ave Suite 515
Memphis, Tennessee 38163 United States
Tel. 5126802386
mmulliga@uthsc.edu
Website
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Specifics of this Data Set:
None

Summary:

This dataset is private. Please refer to the contact information above if you have questions regarding the status of data



About the cases used to generate this set of data:


About the tissue used to generate this set of data:


About the array platform:

(Updated Dec 9, 2015 by AC and RW)

Annotation data were downloaded from ENSEMBL by Arthur Centeno, December 2015. We downloaded the entire transcript database at http://useast.ensembl.org/Mus_musculus/Info/Index.

The positions of transcripts and genes on the mouse assembly are version GRCm38.p4 (mm10 equivalent). However, we converted all chromosome coordinates to the mm9 assembly to be consistent with all other GN1 data sets. However, for some sequences, mostly on Chr Y and the mitochondrial genome, the values are mm10 equivalent (we had no corresponding mm9 values).

We also extracted sequence data corresponding to the transcripts whenever these data were available. However in some cases we do not have sequence data at all.



About data values and data processing:


Notes:


Experiment Type:


Contributor:


Citation:


Data source acknowledgment:


Study Id:
246

CITG WWW service initiated January, 1994 as The Portable Dictionary of the Mouse Genome and June 15, 2001 as WebQTL. This site is currently operated by Rob Williams, Lei Yan, Pjotr Prins, Zachary Sloan, Arthur Centeno. Design and code by Lei Yan, Zach Sloan, Kenneth Manly, Jintao Wang, Danny Arends, Pjotr Prins, Sam Ockman, Xiaodong Zhou, Christian Fernandez, Ning Liu, Rudi Alberts, Elissa Chesler, Evan G. Williams, Alexander G. Williams, Robert W. Williams, and colleagues. Python Powered Registered with Nif
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