See more Hints GNQA Search

You can also use advanced commands. Copy these simple examples into the Get Any field for single term searches and Combined for searches with multiple terms:

  • POSITION=(chr1 25 30) finds genes, markers, or transcripts on chromosome 1 between 25 and 30 Mb.
  • MEAN=(15 16) in the Combined field finds highly expressed genes (15 to 16 log2 units)
  • RANGE=(1.5 2.5) in the Any field finds traits with values with a specified fold-range (minimum = 1). Useful for finding "housekeeping genes" (1.0 1.2) or highly variable molecular assays (10 100).
  • LRS=(15 1000) or LOD=(2 8) finds all traits with peak LRS or LOD scores between lower and upper limits.
  • LRS=(9 999 Chr4 122 155) finds all traits on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999.
  • cisLRS=(15 1000 5) or cisLOD=(2 8 5) finds all cis eQTLs with peak LRS or LOD scores between lower and upper limits, with an inclusion zone of 5 Mb around the parent gene.
  • transLRS=(15 1000 5) or transLOD=(2 8 5) finds all trans eQTLs with peak LRS or LOD scores between lower and upper limits, with an exclusion zone of 5 Mb around the parent gene. You can also add a fourth term specifying which chromosome you want the transLRS to be on (for example transLRS=(15 1000 5 7) would find all trans eQTLs with peak LRS on chromosome 7 that is also a trans eQTL with exclusionary zone of 5Mb).
  • POSITION=(Chr4 122 130) cisLRS=(9 999 10) finds all traits on Chr 4 from 122 and 155 Mb with cisLRS scores between 9 and 999 and an inclusion zone of 10 Mb.
  • RIF=mitochondrial searches RNA databases for GeneRIF links.
  • WIKI=nicotine searches GeneWiki for genes that you or other users have annotated with the word nicotine.
  • GO:0045202 searches for synapse-associated genes listed in the Gene Ontology.
  • RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10) finds diabetes-associated transcripts with peak trans eQTLs on Chr 2 between 100 and 105 Mb with LRS scores between 9 and 999.
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